Installation

To install netcoloc, run this command in your terminal:

$ pip install netcoloc

If you don’t have pip installed, this Python installation guide can guide you through the process.

Prior Versions

Prior version netcoloc v0.1.6 was utilized in the NetColoc publication: Rosenthal, S. B. et al., “Mapping the common gene networks that underlie related diseases.” Nature Protocols (2023). To install this version, please use the following command:

pip install netcoloc==0.1.6

And follow the additional installation instructions for DDOT at https://pypi.org/project/netcoloc/0.1.6/.

The original source code and example notebooks can be acquired from Zenodo: DOI:6654561, or from GitHub:

git clone git@github.com:ucsd-ccbb/NetColoc.git
git checkout -b v0.1.6 tags/v0.1.6

From sources

The sources for NetColoc can be downloaded from the Github repo.

You can either clone the public repository:

$ git clone git://github.com/ucsd-ccbb/NetColoc

Or download the tarball:

$ curl  -OL https://github.com/ucsd-ccbb/NetColoc/tarball/master

Once you have a copy of the source, you can install it with:

$ python setup.py install