History
0.1.7 (2022-06-28)
Removed unused network_localization.py module
0.1.6 (2022-06-16)
ipycytoscape added as a dependency
ipywidgets added as a dependency
Added network_colocalization.sweep_input_pvals() to sweep p-values and scores
Added network_colocalization.calculate_network_enrichment() to sweep over z-score thresholds
netprop.get_individual_heats_matrix() can take a networkx Graph object and internally call netprop.get_normalized_adjancency_matrix(). Documentation updated in both methods to note that the resulting matrices can be saved via numpy.save() and retrieved via numpy.load()
example_notebooks/ASD_CHD_NetColoc_analysis.ipynb now visualizes hierarchy using ipycytoscape
example_notebooks/ASD_CHD_NetColoc_analysis.ipynb updated with a note about using numpy.save() and numpy.load() to save and retrieve result from netprop.get_individual_heats_matrix()
0.1.5 (2022-03-09)
Fixed divide by zero error seen when calculating cosine distance by updating netprop.get_normalized_adjancency_matrix() to properly normalize an adjacency matrix that is asymetric (UD-1863)
0.1.4 (2021-08-31)
If import of DDOT package fails, only a warning message will be displayed unless user invokes
netcoloc.validation.load_MPO()
in which case anImportError
is raisedFixed bug where
z1_threshold
parameter was being passed toz2_threshold
parameter innetcoloc.network_cololcalization.calcualte_network_overlap
method called bynetcoloc.network_colocalization.calculate_network_overlap_subgraph
method
0.1.3 (2021-08-18)
Added dependency gprofiler-official to
setup.py
andrequirements.txt
because this is used bynetwork_colocalization.py
0.1.2 (2021-08-17)
Added new validation.py module containing mouse knockout database functionality
0.1.1 (2021-08-06)
Fixed netcoloc imports in netprop_zcore.py
0.1.0 (2021-03-10)
First release on PyPI.