Installation

netcoloc depends on DDOT which has to be manually installed.

DDOT can be installed one of two ways:

1. To install DDOT by downloading the zip file of the source tree:

   wget https://github.com/idekerlab/ddot/archive/refs/heads/python3.zip
   unzip python3.zip
   cd ddot-python3
   python setup.py bdist_wheel
   pip install dist/ddot*py3*whl
   

2. To install DDOT by cloning the repo:

   git clone --branch python3 https://github.com/idekerlab/ddot.git
   cd ddot
   python setup.py bdist_wheel
   pip install dist/ddot*py3*whl
   

Stable release

To install netcoloc, run this command in your terminal:

$ pip install netcoloc

If you don’t have pip installed, this Python installation guide can guide you through the process.

From sources

The sources for NetColoc can be downloaded from the Github repo.

You can either clone the public repository:

$ git clone git://github.com/ucsd-ccbb/NetColoc

Or download the tarball:

$ curl  -OL https://github.com/ucsd-ccbb/NetColoc/tarball/master

Once you have a copy of the source, you can install it with:

$ python setup.py install