Index

C

calculate_expected_overlap() (in module netcoloc.network_colocalization) calculate_heat_zscores() (in module netcoloc.netprop_zscore) calculate_mean_z_score_distribution() (in module netcoloc.network_colocalization)

calculate_network_enrichment() (in module netcoloc.network_colocalization) calculate_network_overlap() (in module netcoloc.network_colocalization) calculate_network_overlap_subgraph() (in module netcoloc.network_colocalization) check_keywords() (in module netcoloc.validation)

F

find_related_terms() (in module netcoloc.validation)

focus_ontology() (in module netcoloc.validation) format_mapping() (in module netcoloc.validation)

G

get_degree_binning() (in module netcoloc.netcoloc_utils) get_focal_terms() (in module netcoloc.validation) get_individual_heats_matrix() (in module netcoloc.netprop)

get_MP_description() (in module netcoloc.validation) get_normalized_adjacency_matrix() (in module netcoloc.netprop) get_p_from_permutation_results() (in module netcoloc.network_colocalization)

L

load_MGI_mouseKO_data() (in module netcoloc.validation)

load_MPO() (in module netcoloc.validation)

M

map_genes_to_MPO() (in module netcoloc.validation) map_mgi_to_human_orthologs() (in module netcoloc.validation) module netcoloc netcoloc.netcoloc_utils netcoloc.netprop netcoloc.netprop_zscore netcoloc.network_colocalization netcoloc.validation

MPO_enrichment_full() (in module netcoloc.validation) MPO_enrichment_root() (in module netcoloc.validation)

N

netcoloc module netcoloc.netcoloc_utils module netcoloc.netprop module netcoloc.netprop_zscore module

netcoloc.network_colocalization module netcoloc.validation module netprop_zscore() (in module netcoloc.netprop_zscore) network_propagation() (in module netcoloc.netprop)

P

perform_hypergeometric_test() (in module netcoloc.validation)

perform_log_odds_z_test() (in module netcoloc.validation)

S

sweep_input_pvals() (in module netcoloc.network_colocalization)

T

test_single_MPO_term() (in module netcoloc.validation)

transform_edges() (in module netcoloc.network_colocalization)

V

view_G_hier() (in module netcoloc.network_colocalization)